,
Gayatri G [aut],
Kangjie Zhang [aut],
Pooja Kumari [aut],
Stefan Bundfuss [aut] ,
Zelos Zhu [aut],
Sadchla Mascary [aut],
Vladyslav Shuliar [aut] | Title: | SDTM Test Data for the 'Pharmaverse' Family of Packages |
|---|---|
| Description: | A set of Study Data Tabulation Model (SDTM) datasets from the Clinical Data Interchange Standards Consortium (CDISC) pilot project used for testing and developing Analysis Data Model (ADaM) datasets inside the pharmaverse family of packages. SDTM dataset specifications are described in: CDISC Submission Data Standards Team (2021) <https://www.cdisc.org/system/files/members/standard/foundational/SDTMIG%20v3.4-FINAL_2022-07-21.pdf>. |
| Authors: | Edoardo Mancini [aut, cre] ,
Gayatri G [aut],
Kangjie Zhang [aut],
Pooja Kumari [aut],
Stefan Bundfuss [aut] ,
Zelos Zhu [aut],
Sadchla Mascary [aut],
Vladyslav Shuliar [aut] |
| Maintainer: | Edoardo Mancini <[email protected]> |
| License: | Apache License (>= 2.0) |
| Version: | 1.0.0 |
| Built: | 2024-10-16 14:16:39 UTC |
| Source: | https://github.com/pharmaverse/pharmaversesdtm |
An updated SDTM AE dataset that uses the CDISC pilot project
aeae
An object of class tbl_df (inherits from tbl, data.frame) with 1191 rows and 35 columns.
https://github.com/pharmaverse/pharmaversesdtm/blob/main/data/ae.rda
An example Adverse Events SDTM dataset with ophthalmology-specific variable AELAT
ae_ophthaae_ophtha
An object of class tbl_df (inherits from tbl, data.frame) with 1191 rows and 36 columns.
Constructed using ae from the {pharmaversesdtm} package
An example SDTM CE dataset for vaccine studies
ce_vaccinece_vaccine
An object of class tbl_df (inherits from tbl, data.frame) with 44 rows and 29 columns.
Constructed by {admiralvaccine} developers
A SDTM CM dataset from the CDISC pilot project
cmcm
An object of class tbl_df (inherits from tbl, data.frame) with 7510 rows and 22 columns.
A SDTM DM dataset from the CDISC pilot project
dmdm
An object of class tbl_df (inherits from tbl, data.frame) with 306 rows and 25 columns.
An updated SDTM DM dataset with pediatric patients
dm_pedsdm_peds
An object of class tbl_df (inherits from tbl, data.frame) with 5 rows and 26 columns.
Constructed by {admiralpeds} developers
An example SDTM DM dataset for vaccine studies
dm_vaccinedm_vaccine
An object of class tbl_df (inherits from tbl, data.frame) with 2 rows and 28 columns.
Constructed by {admiralvaccine} developers
An updated SDTM DS dataset that uses the CDISC pilot project
dsds
An object of class tbl_df (inherits from tbl, data.frame) with 850 rows and 13 columns.
Gopi Vegesna
https://github.com/pharmaverse/pharmaversesdtm/blob/main/data/ds.rda
An example of standard SDTM EG dataset to be used in deriving ADEG dataset
egeg
An object of class tbl_df (inherits from tbl, data.frame) with 26717 rows and 23 columns.
A SDTM EX dataset from the CDISC pilot project
exex
An object of class tbl_df (inherits from tbl, data.frame) with 591 rows and 17 columns.
An example Exposure SDTM dataset with ophthalmology-specific variables such as EXLOC and EXLAT
ex_ophthaex_ophtha
An object of class tbl_df (inherits from tbl, data.frame) with 591 rows and 19 columns.
Constructed using ex from the {pharmaversesdtm} package
An example SDTM EX dataset for vaccine studies
ex_vaccineex_vaccine
An object of class tbl_df (inherits from tbl, data.frame) with 4 rows and 21 columns.
Constructed by {admiralvaccine} developers
An example SDTM FACE for vaccine studies
face_vaccineface_vaccine
An object of class tbl_df (inherits from tbl, data.frame) with 307 rows and 30 columns.
Constructed by {admiralvaccine} developers
get_terms_fun parameter of
admiral::create_query_data()
An example function as expected by the get_terms_fun parameter of
admiral::create_query_data()
get_terms(basket_select, version, keep_id, temp_env)get_terms(basket_select, version, keep_id, temp_env)
basket_select |
A basket_select object defining the terms |
version |
MedDRA version |
keep_id |
Should |
temp_env |
Temporary environment |
An example SDTM IS for vaccine studies
is_vaccineis_vaccine
An object of class tbl_df (inherits from tbl, data.frame) with 16 rows and 24 columns.
Constructed by {admiralvaccine} developers
An updated SDTM LB dataset that uses data from the CDISC pilot project
lblb
An object of class tbl_df (inherits from tbl, data.frame) with 59580 rows and 23 columns.
Annie Yang
https://github.com/pharmaverse/pharmaversesdtm/blob/main/data/lb.rda
An updated SDTM MH dataset that uses data from the CDISC pilot project
mhmh
An object of class tbl_df (inherits from tbl, data.frame) with 1818 rows and 28 columns.
Annie Yang
A SDTM OE dataset simulated by Ophthalmology team
oe_ophthaoe_ophtha
An object of class grouped_df (inherits from tbl_df, tbl, data.frame) with 15344 rows and 25 columns.
Gordon Miller
A SDTM PC dataset simulated by Antonio Rodriguez Contesti
pcpc
An object of class tbl_df (inherits from tbl, data.frame) with 4572 rows and 20 columns.
Antonio Rodriguez Contesti
https://github.com/pharmaverse/pharmaversesdtm/blob/main/data/pc.rda
A SDTM PP dataset simulated by Antonio Rodriguez Contesti
pppp
An object of class data.frame with 2688 rows and 14 columns.
Antonio Rodriguez Contesti
https://github.com/pharmaverse/pharmaversesdtm/blob/main/data/pp.rda
An example Questionnaires SDTM dataset with ophthalmology-specific questionnaire of NEI VFQ-25
qs_ophthaqs_ophtha
An object of class tbl_df (inherits from tbl, data.frame) with 75922 rows and 20 columns.
Constructed using qs from the {pharmaversesdtm} package
A SDTM RS dataset simulated by Gopi Vegesna
rs_oncors_onco
An object of class tbl_df (inherits from tbl, data.frame) with 5808 rows and 19 columns.
Gopi Vegesna
A SDTM RS dataset using IMWG criteria. The dataset contains just a few patients. It is intended for vignettes and examples of ADaM dataset creation.
rs_onco_imwgrs_onco_imwg
An object of class tbl_df (inherits from tbl, data.frame) with 65 rows and 17 columns.
Vinh Nguyen
A SDTM RS dataset using iRECIST. The dataset contains just a few patients. It is intended for vignettes and examples of ADaM dataset creation.
rs_onco_irecistrs_onco_irecist
An object of class tbl_df (inherits from tbl, data.frame) with 376 rows and 19 columns.
Rohan Thampi
A SDTM RS dataset using RECIST 1.1. The dataset contains just a few patients. It is intended for vignettes and examples of ADaM dataset creation.
rs_onco_recistrs_onco_recist
An object of class tbl_df (inherits from tbl, data.frame) with 66 rows and 14 columns.
Stefan Bundfuss
The dataset is derived from tr_onco_recist.
A SDTM SC dataset simulated by Ophthalmology team
sc_ophthasc_ophtha
An object of class tbl_df (inherits from tbl, data.frame) with 254 rows and 12 columns.
Gordon Miller
An example SDG dataset
sdg_dbsdg_db
An object of class tbl_df (inherits from tbl, data.frame) with 16 rows and 5 columns.
An example SMQ dataset
smq_dbsmq_db
An object of class tbl_df (inherits from tbl, data.frame) with 44 rows and 6 columns.
A SDTM SUPPAE dataset from the CDISC pilot project
suppaesuppae
An object of class tbl_df (inherits from tbl, data.frame) with 1191 rows and 10 columns.
An example SDTM SUPPCE for vaccine studies
suppce_vaccinesuppce_vaccine
An object of class tbl_df (inherits from tbl, data.frame) with 4 rows and 9 columns.
Constructed by {admiralvaccine} developers
A SDTM SUPPDM dataset from the CDISC pilot project
suppdmsuppdm
An object of class tbl_df (inherits from tbl, data.frame) with 1197 rows and 10 columns.
An example SDTM SUPPDM dataset for vaccine studies
suppdm_vaccinesuppdm_vaccine
An object of class tbl_df (inherits from tbl, data.frame) with 2 rows and 9 columns.
Constructed by {admiralvaccine} developers
A SDTM SUPPDS dataset from the CDISC pilot project
suppdssuppds
An object of class tbl_df (inherits from tbl, data.frame) with 3 rows and 9 columns.
An example SDTM SUPPEX dataset for vaccine studies
suppex_vaccinesuppex_vaccine
An object of class tbl_df (inherits from tbl, data.frame) with 4 rows and 9 columns.
Constructed by {admiralvaccine} developers
An example SDTM SUPPFACE dataset for vaccine studies
suppface_vaccinesuppface_vaccine
An object of class tbl_df (inherits from tbl, data.frame) with 4 rows and 9 columns.
Constructed by {admiralvaccine} developers
An example SDTM SUPPIS dataset for vaccine studies
suppis_vaccinesuppis_vaccine
An object of class tbl_df (inherits from tbl, data.frame) with 16 rows and 10 columns.
Constructed by {admiralvaccine} developers
A SDTM supplemental RS dataset using IMWG criteria. It is intended to be used
together with rs_onco_imwg.
supprs_onco_imwgsupprs_onco_imwg
An object of class tbl_df (inherits from tbl, data.frame) with 19 rows and 9 columns.
Vinh Nguyen
A SDTM SUPPTR dataset simulated by Gopi Vegesna
supptr_oncosupptr_onco
An object of class tbl_df (inherits from tbl, data.frame) with 55995 rows and 9 columns.
Gopi Vegesna
A SDTM SV dataset from the CDISC pilot project. Duplicate observation for group
variable USUBJID and VISIT is corrected.
svsv
An object of class tbl_df (inherits from tbl, data.frame) with 3559 rows and 8 columns.
A SDTM TR dataset simulated by Gopi Vegesna
tr_oncotr_onco
An object of class tbl_df (inherits from tbl, data.frame) with 55995 rows and 24 columns.
Gopi Vegesna
A SDTM TR dataset using RECIST 1.1. The dataset contains just a few patients. It is intended for vignettes and examples of ADaM dataset creation.
tr_onco_recisttr_onco_recist
An object of class tbl_df (inherits from tbl, data.frame) with 546 rows and 19 columns.
Stefan Bundfuss
A SDTM TS dataset from the CDISC pilot project
tsts
An object of class tbl_df (inherits from tbl, data.frame) with 33 rows and 6 columns.
A SDTM TU dataset simulated by Gopi Vegesna
tu_oncotu_onco
An object of class tbl_df (inherits from tbl, data.frame) with 7734 rows and 18 columns.
Gopi Vegesna
A SDTM TU dataset using RECIST 1.1. The dataset contains just a few patients. It is intended for vignettes and examples of ADaM dataset creation.
tu_onco_recisttu_onco_recist
An object of class tbl_df (inherits from tbl, data.frame) with 75 rows and 16 columns.
Stefan Bundfuss
A SDTM VS dataset from the CDISC pilot project
vsvs
An object of class tbl_df (inherits from tbl, data.frame) with 29643 rows and 24 columns.
An updated SDTM VS dataset with anthropometric measurements for pediatric patients
vs_pedsvs_peds
An object of class tbl_df (inherits from tbl, data.frame) with 164 rows and 26 columns.
Constructed by {admiralpeds} developers
An example SDTM VS dataset for vaccine studies
vs_vaccinevs_vaccine
An object of class grouped_df (inherits from tbl_df, tbl, data.frame) with 28 rows and 23 columns.
Constructed by {admiralvaccine} developers