Package: pharmaversesdtm 1.4.1.9001

Lina Patil

pharmaversesdtm: SDTM Test Data for the 'Pharmaverse' Family of Packages

A set of Study Data Tabulation Model (SDTM) datasets from the Clinical Data Interchange Standards Consortium (CDISC) pilot project used for testing and developing Analysis Data Model (ADaM) datasets inside the pharmaverse family of packages. SDTM dataset specifications are described in the CDISC SDTM implementation guide, accessible by creating a free account on <https://www.cdisc.org/>.

Authors:Lina Patil [aut, cre], Stefan Bundfuss [aut], Kristin Dahnert [aut], Fanny Gautier [aut], Edoardo Mancini [aut], Tomoyuki Namai [aut], Vinh Nguyen [aut], Gerardo Jose Rodriguez [aut], Vladyslav Shuliar [aut], Cytel Inc. [cph, fnd], F. Hoffmann-La Roche AG [cph, fnd], GlaxoSmithKline LLC [cph, fnd]

pharmaversesdtm_1.4.1.9001.tar.gz
pharmaversesdtm_1.4.1.9001.zip(r-4.7)pharmaversesdtm_1.4.1.9001.zip(r-4.6)pharmaversesdtm_1.4.1.9001.zip(r-4.5)
pharmaversesdtm_1.4.1.9001.tgz(r-4.6-any)pharmaversesdtm_1.4.1.9001.tgz(r-4.5-any)
pharmaversesdtm_1.4.1.9001.tar.gz(r-4.7-any)pharmaversesdtm_1.4.1.9001.tar.gz(r-4.6-any)
pharmaversesdtm_1.4.1.9001.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
pharmaversesdtm/json (API)
NEWS

# Install 'pharmaversesdtm' in R:
install.packages('pharmaversesdtm', repos = c('https://ddsjoberg.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/pharmaverse/pharmaversesdtm/issues

Pkgdown/docs site:https://pharmaverse.github.io

Datasets:
  • ae - Adverse Events
  • ae_ophtha - Adverse Events for Ophthalmology
  • ag_neuro - Procedure Agents Dataset-neuro
  • be - Biospecimen Events
  • ce_vaccine - Clinical Events for Vaccine
  • cm - Concomitant Medication
  • dm - Demography
  • dm_metabolic - Demographic Dataset-metabolic
  • dm_neuro - Demographic Dataset-neuro
  • dm_peds - Demographic Dataset-pediatrics
  • dm_vaccine - Demographics for Vaccine
  • ds - Disposition
  • eg - Electrocardiogram
  • ex - Exposure
  • ex_ophtha - Exposure for Ophthalmology
  • ex_vaccine - Exposures for Vaccine
  • face_vaccine - Findings About Clinical Events for Vaccine
  • is_ada - Immunogenicity Specimen Assessments for ADA
  • is_vaccine - Immunogenicity Specimen Assessments for Vaccine
  • lb - Laboratory Measurements
  • lb_metabolic - Laboratory Measurements Dataset-metabolic
  • lb_neuro - Laboratory Test Dataset-neuro
  • lb_onco_pcwg3 - Laboratory Measurements (PSA) for Oncology
  • mb - Microbiology Specimen
  • mh - Medical History
  • ms - Microbiology Susceptibility
  • nv_neuro - Neurological Assessment Dataset-neuro
  • oe_ophtha - Ophthalmic Examinations for Ophthalmology
  • pc - Pharmacokinetic Concentrations
  • pp - Pharmacokinetic Parameters
  • qs_metabolic - Questionnaire Dataset-metabolic
  • qs_ophtha - Questionnaire for Ophthalmology
  • rs_onco - Disease Response for Oncology
  • rs_onco_ca125 - Disease Response
  • rs_onco_imwg - Disease Response
  • rs_onco_irecist - Disease Response (iRECIST) for Oncology
  • rs_onco_pcwg3 - Disease Response (PCWG3) for Oncology
  • rs_onco_recist - Disease Response (RECIST 1.1) for Oncology
  • sc_ophtha - Subject Characteristic for Ophthalmology
  • sdg_db - SDG
  • smq_db - Standardized MedDRA Queries
  • suppae - Supplemental Adverse Events
  • suppce_vaccine - Supplemental Qualifiers for Clinical Events for Vaccine
  • suppdm - Supplemental Demography
  • suppdm_vaccine - Supplemental Qualifiers for Demographics for Vaccine
  • suppds - Supplemental Disposition
  • suppex_vaccine - Supplemental Qualifiers for Exposures for Vaccine
  • suppface_vaccine - Supplemental Qualifiers for Findings About for Clinical Events for Vaccine
  • suppis_vaccine - Supplemental Qualifiers for Immunogenicity Specimen Assessments for Vaccine
  • suppnv_neuro - Supplemental for Neurological Assessment Dataset-neuro
  • supprs_onco_ca125 - Supplemental Qualifiers for RS_ONCO_CA125
  • supprs_onco_imwg - Supplemental Qualifiers for RS_ONCO_IMWG
  • supptr_onco - Supplemental Tumor Results for Oncology
  • sv - Subject Visits
  • tr_onco - Tumor Results for Oncology
  • tr_onco_recist - Tumor Results (RECIST 1.1) for Oncology
  • ts - Trial Design
  • tu_onco - Tumor Identification for Oncology
  • tu_onco_recist - Tumor Identification (RECIST 1.1) for Oncology
  • vs - Vital Signs
  • vs_metabolic - Vital signs Dataset-metabolic
  • vs_peds - Vital signs Dataset-pediatrics
  • vs_vaccine - Vital Signs for Vaccine

On CRAN:

Conda:

9.52 score 33 stars 1 packages 358 scripts 2.7k downloads 0 exports 0 dependencies

Last updated from:386d22668c. Checks:9 OK. Indexed: no.

TargetResultTimeFilesSyslog
linux-devel-x86_64OK164
source / vignettesOK203
linux-release-x86_64OK129
macos-release-arm64OK107
macos-oldrel-arm64OK99
windows-develOK122
windows-releaseOK101
windows-oldrelOK143
wasm-releaseOK104

Exports:

Dependencies:

Readme and manuals

Help Manual

Help pageTopics
Adverse Eventsae
Adverse Events for Ophthalmologyae_ophtha
Procedure Agents Dataset-neuroag_neuro
Biospecimen Eventsbe
Clinical Events for Vaccinece_vaccine
Concomitant Medicationcm
Demographydm
Demographic Dataset-metabolicdm_metabolic
Demographic Dataset-neurodm_neuro
Demographic Dataset-pediatricsdm_peds
Demographics for Vaccinedm_vaccine
Dispositionds
Electrocardiogrameg
Exposureex
Exposure for Ophthalmologyex_ophtha
Exposures for Vaccineex_vaccine
Findings About Clinical Events for Vaccineface_vaccine
An example function as expected by the 'get_terms_fun' parameter of 'admiral::create_query_data()'get_terms
Immunogenicity Specimen Assessments for ADAis_ada
Immunogenicity Specimen Assessments for Vaccineis_vaccine
Laboratory Measurementslb
Laboratory Measurements Dataset-metaboliclb_metabolic
Laboratory Test Dataset-neurolb_neuro
Laboratory Measurements (PSA) for Oncologylb_onco_pcwg3
Microbiology Specimenmb
Medical Historymh
Microbiology Susceptibilityms
Neurological Assessment Dataset-neuronv_neuro
Ophthalmic Examinations for Ophthalmologyoe_ophtha
Pharmacokinetic Concentrationspc
Pharmacokinetic Parameterspp
Questionnaire Dataset-metabolicqs_metabolic
Questionnaire for Ophthalmologyqs_ophtha
Disease Response for Oncologyrs_onco
Disease Response (GCIG)rs_onco_ca125
Disease Response (IMWG)rs_onco_imwg
Disease Response (iRECIST) for Oncologyrs_onco_irecist
Disease Response (PCWG3) for Oncologyrs_onco_pcwg3
Disease Response (RECIST 1.1) for Oncologyrs_onco_recist
Subject Characteristic for Ophthalmologysc_ophtha
SDGsdg_db
Standardized MedDRA Queriessmq_db
Supplemental Adverse Eventssuppae
Supplemental Qualifiers for Clinical Events for Vaccinesuppce_vaccine
Supplemental Demographysuppdm
Supplemental Qualifiers for Demographics for Vaccinesuppdm_vaccine
Supplemental Dispositionsuppds
Supplemental Qualifiers for Exposures for Vaccinesuppex_vaccine
Supplemental Qualifiers for Findings About for Clinical Events for Vaccinesuppface_vaccine
Supplemental Qualifiers for Immunogenicity Specimen Assessments for Vaccinesuppis_vaccine
Supplemental for Neurological Assessment Dataset-neurosuppnv_neuro
Supplemental Qualifiers for RS_ONCO_CA125supprs_onco_ca125
Supplemental Qualifiers for RS_ONCO_IMWGsupprs_onco_imwg
Supplemental Tumor Results for Oncologysupptr_onco
Subject Visitssv
Tumor Results for Oncologytr_onco
Tumor Results (RECIST 1.1) for Oncologytr_onco_recist
Trial Designts
Tumor Identification for Oncologytu_onco
Tumor Identification (RECIST 1.1) for Oncologytu_onco_recist
Vital Signsvs
Vital signs Dataset-metabolicvs_metabolic
Vital signs Dataset-pediatricsvs_peds
Vital Signs for Vaccinevs_vaccine